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1.
J Exp Bot ; 70(15): 3781-3794, 2019 08 07.
Article in English | MEDLINE | ID: mdl-31175368

ABSTRACT

Color and pigment contents are important aspects of fruit quality and consumer acceptance of cucurbit crops. Here, we describe the independent mapping and cloning of a common causative APRR2 gene regulating pigment accumulation in melon and watermelon. We initially show that the APRR2 transcription factor is causative for the qualitative difference between dark and light green rind in both crops. Further analyses establish the link between sequence or expression level variations in the CmAPRR2 gene and pigment content in the rind and flesh of mature melon fruits. A genome-wide association study (GWAS) of young fruit rind color in a panel composed of 177 diverse melon accessions did not result in any significant association, leading to an earlier assumption that multiple genes are involved in shaping the overall phenotypic variation in this trait. Through resequencing of 25 representative accessions and allelism tests between light rind accessions, we show that multiple independent single nucleotide polymorphisms in the CmAPRR2 gene are causative of the light rind phenotype. The multi-haplotypic nature of this gene explains the lack of detection power obtained through genotyping by sequencing-based GWAS and confirms the pivotal role of this gene in shaping fruit color variation in melon. This study demonstrates the power of combining bi- and multi-allelic designs with deep sequencing, to resolve lack of power due to high haplotypic diversity and low allele frequencies. Due to its central role and broad effect on pigment accumulation in fruits, the APRR2 gene is an attractive target for carotenoid bio-fortification of cucurbit crops.


Subject(s)
Citrullus/metabolism , Cucurbitaceae/metabolism , Fruit/metabolism , Genome, Plant/genetics , Alleles , Carotenoids/metabolism , Chlorophyll/metabolism , Chromosome Mapping , Citrullus/genetics , Cucurbitaceae/genetics , Fruit/genetics , Genes, Plant/genetics , Genome-Wide Association Study , Phenotype , Pigmentation/genetics , Pigmentation/physiology , Quantitative Trait Loci/genetics , RNA-Seq
2.
Plant Sci ; 285: 193-199, 2019 Aug.
Article in English | MEDLINE | ID: mdl-31203884

ABSTRACT

Wheat domestication was a milestone in the rise of agrarian societies in the Fertile Crescent. As opposed to the freely dispersing seeds of its tetraploid progenitor wild emmer, the hallmark trait of domesticated wheat is intact, harvestable spikes. During domestication, wheat acquired recessive loss-of-function mutations in the Brittle Rachis 1 genes, both in the A genome (BTR1-A) and B genome (BTR1-B). In this study, we probe the geographical provenances of these mutations via haplotype analyses of a collection of wild and domesticated accessions. Our results show that the precursor of the domesticated haplotype of BTR1-A was detected in 32% of the wild accessions gathered throughout the Levant, from central Israel to central Turkey. In contrast, the precursor of the domesticated haplotype of BTR1-B, which carries a distinct 11 bp deletion in the promoter region, was found in only 10% of the tested wild accessions, all from the Southern Levant. Moreover, we identified of a single wild emmer accession in Southern Levant that carries the progenitor haplotypes for both BTR1-A and BTR1-B genes. These observations suggest that at least part of the emmer domestication process occurred in Southern Levant, contrary to the widely held view that the northern part of the Fertile Crescent was the center of wheat domestication.


Subject(s)
Domestication , Genes, Plant/genetics , Plant Proteins/genetics , Triticum/genetics , Genes, Plant/physiology , Haplotypes/genetics , Mutation , Plant Proteins/physiology , Promoter Regions, Genetic
3.
Plant Biotechnol J ; 17(12): 2246-2258, 2019 12.
Article in English | MEDLINE | ID: mdl-31022325

ABSTRACT

Years of selection for desirable fruit quality traits in dessert watermelon (Citrullus lanatus) has resulted in a narrow genetic base in modern cultivars. Development of novel genomic and genetic resources offers great potential to expand genetic diversity and improve important traits in watermelon. Here, we report a high-quality genome sequence of watermelon cultivar 'Charleston Gray', a principal American dessert watermelon, to complement the existing reference genome from '97103', an East Asian cultivar. Comparative analyses between genomes of 'Charleston Gray' and '97103' revealed genomic variants that may underlie phenotypic differences between the two cultivars. We then genotyped 1365 watermelon plant introduction (PI) lines maintained at the U.S. National Plant Germplasm System using genotyping-by-sequencing (GBS). These PI lines were collected throughout the world and belong to three Citrullus species, C. lanatus, C. mucosospermus and C. amarus. Approximately 25 000 high-quality single nucleotide polymorphisms (SNPs) were derived from the GBS data using the 'Charleston Gray' genome as the reference. Population genomic analyses using these SNPs discovered a close relationship between C. lanatus and C. mucosospermus and identified four major groups in these two species correlated to their geographic locations. Citrullus amarus was found to have a distinct genetic makeup compared to C. lanatus and C. mucosospermus. The SNPs also enabled identification of genomic regions associated with important fruit quality and disease resistance traits through genome-wide association studies. The high-quality 'Charleston Gray' genome and the genotyping data of this large collection of watermelon accessions provide valuable resources for facilitating watermelon research, breeding and improvement.


Subject(s)
Citrullus/genetics , Genome, Plant , Chromosome Mapping , Disease Resistance , Fruit , Genetic Association Studies , Genomics , Polymorphism, Single Nucleotide
4.
Phytochemistry ; 148: 122-131, 2018 Apr.
Article in English | MEDLINE | ID: mdl-29448137

ABSTRACT

Studies on the active pathways and the genes involved in the biosynthesis of L-phenylalanine-derived volatiles in fleshy fruits are sparse. Melon fruit rinds converted stable-isotope labeled L-phe into more than 20 volatiles. Phenylpropanes, phenylpropenes and benzenoids are apparently produced via the well-known phenylpropanoid pathway involving phenylalanine ammonia lyase (PAL) and being (E)-cinnamic acid a key intermediate. Phenethyl derivatives seemed to be derived from L-phe via a separate biosynthetic route not involving (E)-cinnamic acid and PAL. To explore for a biosynthetic route to (E)-cinnamaldehyde in melon rinds, soluble protein cell-free extracts were assayed with (E)-cinnamic acid, CoA, ATP, NADPH and MgSO4, producing (E)-cinnamaldehyde in vitro. In this context, we characterized CmCNL, a gene encoding for (E)-cinnamic acid:coenzyme A ligase, inferred to be involved in the biosynthesis of (E)-cinnamaldehyde. Additionally we describe CmBAMT, a SABATH gene family member encoding a benzoic acid:S-adenosyl-L-methionine carboxyl methyltransferase having a role in the accumulation of methyl benzoate. Our approach leads to a more comprehensive understanding of L-phe metabolism into aromatic volatiles in melon fruit.


Subject(s)
Cucumis melo/chemistry , Fruit/chemistry , Phenylalanine/metabolism , Glucosides/chemistry , Glucosides/isolation & purification , Glycosylation , Methionine/metabolism , Nuclear Magnetic Resonance, Biomolecular , Phenylalanine Ammonia-Lyase/genetics , Plant Proteins/metabolism , S-Adenosylmethionine/metabolism , Seeds/chemistry , Volatile Organic Compounds/analysis
5.
Plant J ; 94(1): 169-191, 2018 04.
Article in English | MEDLINE | ID: mdl-29385635

ABSTRACT

Combined quantitative trait loci (QTL) and expression-QTL (eQTL) mapping analysis was performed to identify genetic factors affecting melon (Cucumis melo) fruit quality, by linking genotypic, metabolic and transcriptomic data from a melon recombinant inbred line (RIL) population. RNA sequencing (RNA-Seq) of fruit from 96 RILs yielded a highly saturated collection of > 58 000 single-nucleotide polymorphisms, identifying 6636 recombination events that separated the genome into 3663 genomic bins. Bin-based QTL analysis of 79 RILs and 129 fruit-quality traits affecting taste, aroma and color resulted in the mapping of 241 QTL. Thiol acyltransferase (CmThAT1) gene was identified within the QTL interval of its product, S-methyl-thioacetate, a key component of melon fruit aroma. Metabolic activity of CmThAT1-encoded protein was validated in bacteria and in vitro. QTL analysis of flesh color intensity identified a candidate white-flesh gene (CmPPR1), one of two major loci determining fruit flesh color in melon. CmPPR1 encodes a member of the pentatricopeptide protein family, involved in processing of RNA in plastids, where carotenoid and chlorophyll pigments accumulate. Network analysis of > 12 000 eQTL mapped for > 8000 differentially expressed fruit genes supported the role of CmPPR1 in determining the expression level of plastid targeted genes. We highlight the potential of RNA-Seq-based QTL analysis of small to moderate size, advanced RIL populations for precise marker-assisted breeding and gene discovery. We provide the following resources: a RIL population genotyped with a unique set of SNP markers, confined genomic segments that harbor QTL governing 129 traits and a saturated set of melon eQTLs.


Subject(s)
Chromosome Mapping , Cucurbitaceae/genetics , Fruit/genetics , Quantitative Trait Loci/genetics , Cucurbitaceae/metabolism , Food Quality , Fruit/metabolism , Genes, Plant/genetics , Genes, Plant/physiology , Genetic Linkage , Genome-Wide Association Study , Polymorphism, Single Nucleotide/genetics , Sequence Analysis, RNA
6.
Sci Rep ; 7(1): 9770, 2017 08 29.
Article in English | MEDLINE | ID: mdl-28852011

ABSTRACT

Cucumis melo is highly diverse for fruit traits providing wide breeding and genetic research opportunities, including genome-wide association (GWA) analysis. We used a collection of 177 accessions representing the two C. melo subspecies and 11 horticultural groups for detailed characterization of fruit traits variation and evaluation of the potential of GWA for trait mapping in melon. Through genotyping-by-sequencing, 23,931 informative SNPs were selected for genome-wide analyses. We found that linkage-disequilibrium decays at ~100 Kb in this collection and that population structure effect on association results varies between traits. We mapped several monogenic traits to narrow intervals overlapping with known causative genes, demonstrating the potential of diverse collections and GWA for mapping Mendelian traits to a candidate-gene level in melon. We further report on mapping of fruit shape quantitative trait loci (QTLs) and comparison with multiple previous QTL studies. Expansion of sample size and a more balanced representation of taxonomic groups might improve efficiency for simple traits dissection. But, as in other plant species, integrated linkage-association multi-allelic approaches are likely to produce better combination of statistical power, diversity capture and mapping resolution in melon. Our data can be utilized for selection of the most appropriate accessions for such approaches.


Subject(s)
Chromosome Mapping , Cucurbitaceae/genetics , Genes, Plant , Genome, Plant , Genome-Wide Association Study , Linkage Disequilibrium , Fruit , Genetic Linkage , Genetic Variation , Phenotype , Quantitative Trait Loci , Quantitative Trait, Heritable
7.
Plant Physiol ; 173(1): 376-389, 2017 01.
Article in English | MEDLINE | ID: mdl-27837090

ABSTRACT

ß-Carotene adds nutritious value and determines the color of many fruits, including melon (Cucumis melo). In melon mesocarp, ß-carotene accumulation is governed by the Orange gene (CmOr) golden single-nucleotide polymorphism (SNP) through a yet to be discovered mechanism. In Arabidopsis (Arabidopsis thaliana), OR increases carotenoid levels by posttranscriptionally regulating phytoene synthase (PSY). Here, we identified a CmOr nonsense mutation (Cmor-lowß) that lowered fruit ß-carotene levels with impaired chromoplast biogenesis. Cmor-lowß exerted a minimal effect on PSY transcripts but dramatically decreased PSY protein levels and enzymatic activity, leading to reduced carotenoid metabolic flux and accumulation. However, the golden SNP was discovered to not affect PSY protein levels and carotenoid metabolic flux in melon fruit, as shown by carotenoid and immunoblot analyses of selected melon genotypes and by using chemical pathway inhibitors. The high ß-carotene accumulation in golden SNP melons was found to be due to a reduced further metabolism of ß-carotene. This was revealed by genetic studies with double mutants including carotenoid isomerase (yofi), a carotenoid-isomerase nonsense mutant, which arrests the turnover of prolycopene. The yofi F2 segregants accumulated prolycopene independently of the golden SNP Moreover, Cmor-lowß was found to inhibit chromoplast formation and chloroplast disintegration in fruits from 30 d after anthesis until ripening, suggesting that CmOr regulates the chloroplast-to-chromoplast transition. Taken together, our results demonstrate that CmOr is required to achieve PSY protein levels to maintain carotenoid biosynthesis metabolic flux but that the mechanism of the CmOr golden SNP involves an inhibited metabolism downstream of ß-carotene to dramatically affect both carotenoid content and plastid fate.


Subject(s)
Carotenoids/metabolism , Cucumis melo/metabolism , Metabolic Flux Analysis , Plant Proteins/metabolism , Amino Acid Sequence , Biosynthetic Pathways/genetics , Chloroplasts/metabolism , Cucumis melo/genetics , Ecotype , Epistasis, Genetic , Ethyl Methanesulfonate , Fruit/genetics , Fruit/growth & development , Fruit/metabolism , Gene Expression Regulation, Plant , Genes, Plant , Genetic Variation , Genotype , Geranylgeranyl-Diphosphate Geranylgeranyltransferase/metabolism , Models, Biological , Mutation/genetics , Phenotype , Pigmentation/genetics , Plant Proteins/chemistry , Plant Proteins/genetics , Polymorphism, Single Nucleotide/genetics , RNA, Messenger/genetics , RNA, Messenger/metabolism
8.
Proc Natl Acad Sci U S A ; 113(47): E7619-E7628, 2016 11 22.
Article in English | MEDLINE | ID: mdl-27821754

ABSTRACT

The consumption of sweeteners, natural as well as synthetic sugars, is implicated in an array of modern-day health problems. Therefore, natural nonsugar sweeteners are of increasing interest. We identify here the biosynthetic pathway of the sweet triterpenoid glycoside mogroside V, which has a sweetening strength of 250 times that of sucrose and is derived from mature fruit of luo-han-guo (Siraitia grosvenorii, monk fruit). A whole-genome sequencing of Siraitia, leading to a preliminary draft of the genome, was combined with an extensive transcriptomic analysis of developing fruit. A functional expression survey of nearly 200 candidate genes identified the members of the five enzyme families responsible for the synthesis of mogroside V: squalene epoxidases, triterpenoid synthases, epoxide hydrolases, cytochrome P450s, and UDP-glucosyltransferases. Protein modeling and docking studies corroborated the experimentally proven functional enzyme activities and indicated the order of the metabolic steps in the pathway. A comparison of the genomic organization and expression patterns of these Siraitia genes with the orthologs of other Cucurbitaceae implicates a strikingly coordinated expression of the pathway in the evolution of this species-specific and valuable metabolic pathway. The genomic organization of the pathway genes, syntenously preserved among the Cucurbitaceae, indicates, on the other hand, that gene clustering cannot account for this novel secondary metabolic pathway.


Subject(s)
Biosynthetic Pathways , Cucurbitaceae/growth & development , Plant Proteins/genetics , Triterpenes/metabolism , Cucurbitaceae/genetics , Cucurbitaceae/metabolism , Cytochrome P-450 Enzyme System/chemistry , Cytochrome P-450 Enzyme System/genetics , Cytochrome P-450 Enzyme System/metabolism , Epoxide Hydrolases/chemistry , Epoxide Hydrolases/genetics , Epoxide Hydrolases/metabolism , Gene Expression Profiling/methods , Gene Expression Regulation, Plant , Glucosyltransferases/chemistry , Glucosyltransferases/genetics , Glucosyltransferases/metabolism , Models, Molecular , Molecular Docking Simulation , Plant Proteins/chemistry , Plant Proteins/metabolism , Sequence Analysis, DNA/methods , Squalene Monooxygenase/chemistry , Squalene Monooxygenase/genetics , Squalene Monooxygenase/metabolism
9.
BMC Plant Biol ; 15: 274, 2015 Nov 09.
Article in English | MEDLINE | ID: mdl-26553015

ABSTRACT

BACKGROUND: Melon fruit flesh color is primarily controlled by the "golden" single nucleotide polymorhism of the "Orange" gene, CmOr, which dominantly triggers the accumulation of the pro-vitamin A molecule, ß-carotene, in the fruit mesocarp. The mechanism by which CmOr operates is not fully understood. To identify cellular and metabolic processes associated with CmOr allelic variation, we compared the transcriptome of bulks of developing fruit of homozygous orange and green fruited F3 families derived from a cross between orange and green fruited parental lines. RESULTS: Pooling together F3 families that share same fruit flesh color and thus the same CmOr allelic variation, normalized traits unrelated to CmOr allelic variation. RNA sequencing analysis of these bulks enabled the identification of differentially expressed genes. These genes were clustered into functional groups. The relatively enriched functional groups were those involved in photosynthesis, RNA and protein regulation, and response to stress. CONCLUSIONS: The differentially expressed genes and the enriched processes identified here by bulk segregant RNA sequencing analysis are likely part of the regulatory network of CmOr. Our study demonstrates the resolution power of bulk segregant RNA sequencing in identifying genes related to commercially important traits and provides a useful tool for better understanding the mode of action of CmOr gene in the mediation of carotenoid accumulation.


Subject(s)
Cucumis melo/genetics , Gene Expression Profiling/methods , Gene Expression Regulation, Plant , Plant Proteins/genetics , Transcriptome , beta Carotene/metabolism , Cucumis melo/metabolism , Fruit/metabolism , Molecular Sequence Data , Plant Proteins/metabolism , Sequence Analysis, DNA
10.
Plant Physiol ; 169(3): 1714-26, 2015 Nov.
Article in English | MEDLINE | ID: mdl-26358418

ABSTRACT

The flavonoids are phenylpropanoid-derived metabolites that are ubiquitous in plants, playing many roles in growth and development. Recently, we observed that fruit rinds of yellow casaba muskmelons (Cucumis melo 'Inodorous Group') accumulate naringenin chalcone, a yellow flavonoid pigment. With RNA-sequencing analysis of bulked segregants representing the tails of a population segregating for naringenin chalcone accumulation followed by fine mapping and genetic transformation, we identified a Kelch domain-containing F-box protein coding (CmKFB) gene that, when expressed, negatively regulates naringenin chalcone accumulation. Additional metabolite analysis indicated that downstream flavonoids are accumulated together with naringenin chalcone, whereas CmKFB expression diverts the biochemical flux toward coumarins and general phenylpropanoids. These results show that CmKFB functions as a posttranscriptional regulator that diverts flavonoid metabolic flux.


Subject(s)
Chalcones/metabolism , Cucumis melo/genetics , F-Box Proteins/genetics , Flavonoids/metabolism , Gene Expression Regulation, Plant , Base Sequence , Cucumis melo/cytology , Cucumis melo/metabolism , F-Box Proteins/metabolism , Fruit/cytology , Fruit/genetics , Fruit/metabolism , Gene Expression , Genetic Loci/genetics , Metabolic Flux Analysis , Molecular Sequence Data , Phenotype , Phylogeny , Plant Leaves/cytology , Plant Leaves/genetics , Plant Leaves/metabolism , Plant Proteins/genetics , Plant Proteins/metabolism , Polymorphism, Single Nucleotide/genetics , Propanols/metabolism , Sequence Analysis, DNA
12.
FEMS Microbiol Ecol ; 91(7)2015 Jul.
Article in English | MEDLINE | ID: mdl-26183916

ABSTRACT

Endophytes are microorganisms that mainly colonize vegetative parts, but are also found in reproductive and disseminating organs, and may have beneficial characteristics. To identify microorganisms associated with the agriculturally important family, Cucurbitaceae, endophytes were initially determined in fruits of Cucumis melo Reticulatus Group 'Dulce' by a cultivation-independent approach based on fluorescence in situ hybridization using double labeling of oligonucleotide probes. Alpha-, Beta-, Gammaproteobacteria, Firmicutes and Actinobacteria were localized inside the fruits. Culturable bacteria were further isolated and identified from fruit tissues of 'Dulce', from fruits of other cultivated and wild-field-grown Cucurbitaceae, and from wild fruits growing under natural conditions. Low densities of culturable bacteria were detected in the investigated fruits, especially in four out of the five wild species, regardless of their growing environment. Substantial differences were observed between the wild and cultivated cucurbit taxa in regard to the number of colonized fruits as well as the type of endophytes. Bacillus was the most dominant genus of endophytes colonizing fruits of Cucurbitaceae. The antagonistic effects of isolated endophytes were assessed against cucurbit disease agents in dual-culture assays. Several bacterial isolates exhibited antagonistic properties against the tested plant pathogens. The identified bacteria may be useful for protecting plants not only in the field, but also for post-harvest.


Subject(s)
Bacteria/classification , Cucumis melo/microbiology , Endophytes/classification , Fruit/microbiology , Actinobacteria/classification , Actinobacteria/genetics , Actinobacteria/isolation & purification , Agriculture , Alphaproteobacteria/classification , Alphaproteobacteria/genetics , Alphaproteobacteria/isolation & purification , Bacteria/genetics , Bacteria/isolation & purification , Betaproteobacteria/classification , Betaproteobacteria/genetics , Betaproteobacteria/isolation & purification , Endophytes/genetics , Endophytes/isolation & purification , Firmicutes/classification , Firmicutes/genetics , Firmicutes/isolation & purification , Gammaproteobacteria/classification , Gammaproteobacteria/genetics , Gammaproteobacteria/isolation & purification , In Situ Hybridization, Fluorescence , Microbial Consortia/genetics
13.
BMC Plant Biol ; 15: 71, 2015 Mar 03.
Article in English | MEDLINE | ID: mdl-25887588

ABSTRACT

BACKGROUND: Melon (Cucumis melo) fruits exhibit phenotypic diversity in several key quality determinants such as taste, color and aroma. Sucrose, carotenoids and volatiles are recognized as the key compounds shaping the above corresponding traits yet the full network of biochemical events underlying their synthesis have not been comprehensively described. To delineate the cellular processes shaping fruit quality phenotypes, a population of recombinant inbred lines (RIL) was used as a source of phenotypic and genotypic variations. In parallel, ripe fruits were analyzed for both the quantified level of 77 metabolic traits directly associated with fruit quality and for RNA-seq based expression profiles generated for 27,000 unigenes. First, we explored inter-metabolite association patterns; then, we described metabolites versus gene association patterns; finally, we used the correlation-based associations for predicting uncharacterized synthesis pathways. RESULTS: Based on metabolite versus metabolite and metabolite versus gene association patterns, we divided metabolites into two key groups: a group including ethylene and aroma determining volatiles whose accumulation patterns are correlated with the expression of genes involved in the glycolysis and TCA cycle pathways; and a group including sucrose and color determining carotenoids whose accumulation levels are correlated with the expression of genes associated with plastid formation. CONCLUSIONS: The study integrates multiple processes into a genome scale perspective of cellular activity. This lays a foundation for deciphering the role of gene markers associated with the determination of fruit quality traits.


Subject(s)
Color , Cucurbitaceae/metabolism , Odorants , Taste , Cucurbitaceae/genetics , Gene Expression , Genes, Plant
14.
Plant J ; 82(2): 267-79, 2015 Apr.
Article in English | MEDLINE | ID: mdl-25754094

ABSTRACT

The flesh color of Cucumis melo (melon) is genetically determined, and can be white, light green or orange, with ß-carotene being the predominant pigment. We associated carotenoid accumulation in melon fruit flesh with polymorphism within CmOr, a homolog of the cauliflower BoOr gene, and identified CmOr as the previously described gf locus in melon. CmOr was found to co-segregate with fruit flesh color, and presented two haplotypes (alleles) in a broad germplasm collection, one being associated with orange flesh and the second being associated with either white or green flesh. Allelic variation of CmOr does not affect its transcription or protein level. The variation also does not affect its plastid subcellular localization. Among the identified single nucleotide polymorphisms (SNPs) between CmOr alleles in orange versus green/white-flesh fruit, a single SNP causes a change of an evolutionarily highly conserved arginine to histidine in the CmOr protein. Functional analysis of CmOr haplotypes in an Arabidopsis callus system confirmed the ability of the CmOr orange haplotype to induce ß-carotene accumulation. Site-directed mutagenesis of the CmOr green/white haplotype to change the CmOR arginine to histidine triggered ß-carotene accumulation. The identification of the 'golden' SNP in CmOr, which is responsible for the non-orange and orange melon fruit phenotypes, provides new tools for studying the Or mechanism of action, and suggests genome editing of the Or gene for nutritional biofortification of crops.


Subject(s)
Carotenoids/genetics , Cucumis melo/genetics , Fruit/genetics , Plant Proteins/genetics , Carotenoids/metabolism , Cucumis melo/metabolism , Fruit/metabolism , Molecular Sequence Data , Mutagenesis, Site-Directed , Pigmentation , Plant Proteins/metabolism , Polymorphism, Single Nucleotide/genetics
15.
Yeast ; 32(1): 103-14, 2015 Jan.
Article in English | MEDLINE | ID: mdl-25308777

ABSTRACT

Cucurbitacins are a group of bitter-tasting oxygenated tetracyclic triterpenes that are produced in the family Cucurbitaceae and other plant families. The natural roles of cucurbitacins in plants are probably related to defence against pathogens and pests. Cucurbitadienol, a triterpene synthesized from oxidosqualene, is the first committed precursor to cucurbitacins produced by a specialized oxidosqualene cyclase termed cucurbitadienol synthase. We explored cucurbitacin accumulation in watermelon in relation to bitterness. Our findings show that cucurbitacins are accumulated in bitter-tasting watermelon, Citrullus lanatus var. citroides, as well as in their wild ancestor, C. colocynthis, but not in non-bitter commercial cultivars of sweet watermelon (C. lanatus var. lanatus). Molecular analysis of genes expressed in the roots of several watermelon accessions led to the isolation of three sequences (CcCDS1, CcCDS2 and ClCDS1), all displaying high similarity to the pumpkin CpCPQ, encoding a protein previously shown to possess cucurbitadienol synthase activity. We utilized the Saccharomyces cerevisiae strain BY4743, heterozygous for lanosterol synthase, to probe for possible encoded cucurbitadienol synthase activity of the expressed watermelon sequences. Functional expression of the two sequences isolated from C. colocynthis (CcCDS1 and CcCDS2) in yeast revealed that only CcCDS2 possessed cucurbitadienol synthase activity, while CcCDS1 did not display cucurbitadienol synthase activity in recombinant yeast. ClCDS1 isolated from C. lanatus var. lanatus is almost identical to CcCDS1. Our results imply that CcCDS2 plays a role in imparting bitterness to watermelon. Yeast has been an excellent diagnostic tool to determine the first committed step of cucurbitacin biosynthesis in watermelon.


Subject(s)
Citrullus/metabolism , Cucurbitacins/biosynthesis , Flavoring Agents/metabolism , Plant Proteins/metabolism , Saccharomyces cerevisiae/metabolism , Amino Acid Sequence , Citrullus/chemistry , Citrullus/enzymology , Citrullus/genetics , Humans , Molecular Sequence Data , Plant Proteins/chemistry , Plant Proteins/genetics , Saccharomyces cerevisiae/genetics , Sequence Alignment , Taste
16.
Nat Commun ; 5: 4026, 2014 Jun 05.
Article in English | MEDLINE | ID: mdl-24898284

ABSTRACT

Taste has been the subject of human selection in the evolution of agricultural crops, and acidity is one of the three major components of fleshy fruit taste, together with sugars and volatile flavour compounds. We identify a family of plant-specific genes with a major effect on fruit acidity by map-based cloning of C. melo PH gene (CmPH) from melon, Cucumis melo taking advantage of the novel natural genetic variation for both high and low fruit acidity in this species. Functional silencing of orthologous PH genes in two distantly related plant families, cucumber and tomato, produced low-acid, bland tasting fruit, showing that PH genes control fruit acidity across plant families. A four amino-acid duplication in CmPH distinguishes between primitive acidic varieties and modern dessert melons. This fortuitous mutation served as a preadaptive antecedent to the development of sweet melon cultigens in Central Asia over 1,000 years ago.


Subject(s)
Cucumis melo/genetics , Cucumis sativus/genetics , Fruit/chemistry , Plant Proteins/genetics , Solanum lycopersicum/genetics , Citric Acid/analysis , Cucumis melo/chemistry , Cucumis sativus/chemistry , Fruit/genetics , Hydrogen-Ion Concentration , Solanum lycopersicum/chemistry , Malates/analysis
17.
Arch Biochem Biophys ; 539(2): 117-25, 2013 Nov 15.
Article in English | MEDLINE | ID: mdl-23973661

ABSTRACT

In order to broaden the available genetic variation of melon, we developed an ethyl methanesulfonate mutation library in an orange-flesh 'Charentais' type melon line that accumulates ß-carotene. One mutagenized M2 family segregated for a novel recessive trait, a yellow-orange fruit flesh ('yofI'). HPLC analysis revealed that 'yofI' accumulates pro-lycopene (tetra-cis-lycopene) as its major fruit pigment. The altered carotenoid composition of 'yofI' is associated with a significant change of the fruit aroma since cleavage of ß-carotene yields different apocarotenoids than the cleavage of pro-lycopene. Normally, pro-lycopene is further isomerized by CRTISO (carotenoid isomerase) to yield all-trans-lycopene, which is further cyclized to ß-carotene in melon fruit. Cloning and sequencing of 'yofI' CRTISO identified two mRNA sequences which lead to truncated forms of CRTISO. Sequencing of the genomic CRTISO identified an A-T transversion in 'yofI' which leads to a premature STOP codon. The early carotenoid pathway genes were up regulated in yofI fruit causing accumulation of other intermediates such as phytoene and ζ-carotene. Total carotenoid levels are only slightly increased in the mutant. Mutants accumulating pro-lycopene have been reported in both tomato and watermelon fruits, however, this is the first report of a non-lycopene accumulating fruit showing this phenomenon.


Subject(s)
Cucumis melo/genetics , Ethyl Methanesulfonate/chemistry , Mutagenesis , beta Carotene/metabolism , cis-trans-Isomerases/genetics , Biosynthetic Pathways/genetics , Carotenoids/genetics , Chromatography, High Pressure Liquid , Cucumis melo/chemistry , Cucumis melo/growth & development , Lycopene , beta Carotene/chemistry , beta Carotene/genetics , cis-trans-Isomerases/chemistry
18.
Plant J ; 74(3): 458-72, 2013 May.
Article in English | MEDLINE | ID: mdl-23402686

ABSTRACT

Sulfur-containing aroma volatiles are important contributors to the distinctive aroma of melon and other fruits. Melon cultivars and accessions differ in the content of sulfur-containing and other volatiles. L-methionine has been postulated to serve as a precursor of these volatiles. Incubation of melon fruit cubes with ¹³C- and ²H-labeled L-methionine revealed two distinct catabolic routes into volatiles. One route apparently involves the action of an L-methionine aminotransferase and preserves the main carbon skeleton of L-methionine. The second route apparently involves the action of an L-methionine-γ-lyase activity, releasing methanethiol, a backbone for formation of thiol-derived aroma volatiles. Exogenous L-methionine also generated non-sulfur volatiles by further metabolism of α-ketobutyrate, a product of L-methionine-γ-lyase activity. α-Ketobutyrate was further metabolized into L-isoleucine and other important melon volatiles, including non-sulfur branched and straight-chain esters. Cell-free extracts derived from ripe melon fruit exhibited L-methionine-γ-lyase enzymatic activity. A melon gene (CmMGL) ectopically expressed in Escherichia coli, was shown to encode a protein possessing L-methionine-γ-lyase enzymatic activity. Expression of CmMGL was relatively low in early stages of melon fruit development, but increased in the flesh of ripe fruits, depending on the cultivar tested. Moreover, the levels of expression of CmMGL in recombinant inbred lines co-segregated with the levels of sulfur-containing aroma volatiles enriched with +1 m/z unit and postulated to be produced via this route. Our results indicate that L-methionine is a precursor of both sulfur and non-sulfur aroma volatiles in melon fruit.


Subject(s)
Cucumis melo/enzymology , Fruit/metabolism , Methionine/metabolism , Sulfur/metabolism , Volatile Organic Compounds/metabolism , Carbon-Sulfur Lyases/metabolism , Cucumis melo/genetics , Cucumis melo/growth & development , Enzyme Activation , Escherichia coli/genetics , Escherichia coli/metabolism , Fruit/genetics , Fruit/growth & development , Genes, Plant , Isoleucine/metabolism , Plant Proteins/genetics , Plant Proteins/metabolism , Solubility , Species Specificity , Transaminases/metabolism
19.
Theor Appl Genet ; 126(2): 349-58, 2013 Feb.
Article in English | MEDLINE | ID: mdl-23070028

ABSTRACT

The availability of sequence information for many plants has opened the way to advanced genetic analysis in many non-model plants. Nevertheless, exploration of genetic variation on a large scale and its use as a tool for the identification of traits of interest are still rare. In this study, we combined a bulk segregation approach with our own-designed microarrays to map the pH locus that influences fruit pH in melon. Using these technologies, we identified a set of markers that are genetically linked to the pH trait. Further analysis using a set of melon cultivars demonstrated that some of these markers are tightly linked to the pH trait throughout our germplasm collection. These results validate the utility of combining microarray technology with a bulk segregation approach in mapping traits of interest in non-model plants.


Subject(s)
Biomarkers/metabolism , Chromosome Segregation , Cucurbitaceae/genetics , Gene Expression Profiling , Genes, Plant/genetics , Polymorphism, Single Nucleotide/genetics , Quantitative Trait Loci , Chromosome Mapping , Hydrogen-Ion Concentration , Linkage Disequilibrium , Oligonucleotide Array Sequence Analysis , Phenotype
20.
Proc Biol Sci ; 279(1734): 1791-6, 2012 May 07.
Article in English | MEDLINE | ID: mdl-22113034

ABSTRACT

Bacteria in the genus Rickettsia, best known as vertebrate pathogens vectored by blood-feeding arthropods, can also be found in phytophagous insects. The presence of closely related bacterial symbionts in evolutionarily distant arthropod hosts presupposes a means of horizontal transmission, but no mechanism for this transmission has been described. Using a combination of experiments with live insects, molecular analyses and microscopy, we found that Rickettsia were transferred from an insect host (the whitefly Bemisia tabaci) to a plant, moved inside the phloem, and could be acquired by other whiteflies. In one experiment, Rickettsia was transferred from the whitefly host to leaves of cotton, basil and black nightshade, where the bacteria were restricted to the phloem cells of the plant. In another experiment, Rickettsia-free adult whiteflies, physically segregated but sharing a cotton leaf with Rickettsia-plus individuals, acquired the Rickettsia at a high rate. Plants can serve as a reservoir for horizontal transmission of Rickettsia, a mechanism which may explain the occurrence of phylogenetically similar symbionts among unrelated phytophagous insect species. This plant-mediated transmission route may also exist in other insect-symbiont systems and, since symbionts may play a critical role in the ecology and evolution of their hosts, serve as an immediate and powerful tool for accelerated evolution.


Subject(s)
Gene Transfer, Horizontal , Gossypium/microbiology , Hemiptera/microbiology , Plant Leaves/microbiology , Rickettsia/physiology , Symbiosis , Animals , DNA, Bacterial/analysis , In Situ Hybridization, Fluorescence , Phloem/microbiology , Plants/microbiology , Polymerase Chain Reaction , Rickettsia/genetics , Sequence Analysis, DNA
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